Antti Honkela: search on Z-Library

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1

Fast and accurate approximate inference of transcript expression from RNA-seq data

Hensman, James, Papastamoulis, Panagiotis, Glaus, Peter, Honkela, Antti, Rattray, Magnus

Journal:

Year:

2015

Language:

english

File:

PDF, 1.31 MB

english, 2015

2

Blind separation of nonlinear mixtures by variational Bayesian learning

Antti Honkela, Harri Valpola, Alexander Ilin, Juha Karhunen

Journal:

Digital Signal Processing

Year:

2007

Language:

english

File:

PDF, 574 KB

english, 2007

3

Agglomerative independent variable group analysis

Antti Honkela, Jeremias Seppä, Esa Alhoniemi

Journal:

Year:

2008

Language:

english

File:

PDF, 389 KB

english, 2008

4

Identifying targets of multiple co-regulating transcription factors from expression time-series by Bayesian model comparison

Michalis K Titsias, Antti Honkela, Neil D Lawrence, Magnus Rattray

Journal:

BMC Systems Biology

Year:

2012

Language:

english

File:

PDF, 417 KB

english, 2012

5

[IEEE 2009 International Joint Conference on Neural Networks (IJCNN 2009 - Atlanta) - Atlanta, Ga, USA (2009.06.14-2009.06.19)] 2009 International Joint Conference on Neural Networks - A gradient-based algorithm competitive with variational Bayesian EM for mixture of Gaussians

Kuusela, Mikael, Raiko, Tapani, Honkela, Antti, Karhunen, Juha

Year:

2009

Language:

english

File:

PDF, 1.66 MB

english, 2009

6

Missing-Feature Reconstruction With a Bounded Nonlinear State-Space Model

Remes, Ulpu, Palomaki, Kalle J., Raiko, Tapani, Honkela, Antti, Kurimo, Mikko

Journal:

IEEE Signal Processing Letters

Year:

2011

Language:

english

File:

PDF, 485 KB

english, 2011

7

Model-based method for transcription factor target identification with limited data

Honkela, Antti, Girardot, Charles, Gustafson, E. Hilary, Liu, Ya-Hsin, Furlong, Eileen E. M., Lawrence, Neil D., Rattray, Magnus

Journal:

Proceedings of the National Academy of Sciences

Year:

2010

Language:

english

File:

PDF, 347 KB

english, 2010

8

[IEEE 2010 IEEE International Workshop on Machine Learning for Signal Processing (MLSP) - Kittila, Finland (2010.08.29-2010.09.1)] 2010 IEEE International Workshop on Machine Learning for Signal Processing - Variational inference and learning for non-linear state-space models with state-dependent observation noise

Peltola, Veli, Honkela, Antti

Year:

2010

Language:

english

File:

PDF, 327 KB

english, 2010

9

[IEEE 2010 IEEE International Workshop on Machine Learning for Signal Processing (MLSP) - Kittila, Finland (2010.08.29-2010.09.1)] 2010 IEEE International Workshop on Machine Learning for Signal Processing - Ranking of gene regulators through differential equations and Gaussian processes

Honkela, Antti, Milo, Marta, Holley, Matthew, Rattray, Magnus, Lawrence, Neil D.

Year:

2010

Language:

english

File:

PDF, 646 KB

english, 2010

10

Inference of RNA Polymerase II Transcription Dynamics from Chromatin Immunoprecipitation Time Course Data

wa Maina, Ciira, Honkela, Antti, Matarese, Filomena, Grote, Korbinian, Stunnenberg, Hendrik G., Reid, George, Lawrence, Neil D., Rattray, Magnus, Sinha, Saurabh

Journal:

PLoS Computational Biology

Year:

2014

Language:

english

File:

PDF, 3.03 MB

english, 2014

11

Model-based method for transcription factor target identification with limited data

Antti Honkela, Charles Girardot, E. Hilary Gustafson, Ya-Hsin Liu, Eileen E. M. Furlong, Neil D. Lawrence, Magnus Rattray and David Baker

Journal:

Proceedings of the National Academy of Sciences

Year:

2010

File:

PDF, 1.66 MB

2010

12

Model-based method for transcription factor target identification with limited data

Antti Honkela, Charles Girardot, E. Hilary Gustafson, Ya-Hsin Liu, Eileen E. M. Furlong, Neil D. Lawrence, Magnus Rattray and David Baker

Journal:

Proceedings of the National Academy of Sciences

Year:

2010

Language:

english

File:

PDF, 1.66 MB

english, 2010

13

Analysis of differential splicing suggests different modes of short-term splicing regulation

Topa, Hande, Honkela, Antti

Journal:

Year:

2016

Language:

english

File:

PDF, 3.09 MB

english, 2016

14

[IEEE 2010 IEEE International Workshop on Machine Learning for Signal Processing (MLSP) - Kittila, Finland (2010.08.29-2010.09.1)] 2010 IEEE International Workshop on Machine Learning for Signal Processing - Preface

Kaski, Samuel, Miller, David J., Oja, Erkki, Honkela, Antti

Year:

2010

Language:

english

File:

PDF, 23 KB

english, 2010

15

Sequence element enrichment analysis to determine the genetic basis of bacterial phenotypes

Lees, John A., Vehkala, Minna, Välimäki, Niko, Harris, Simon R., Chewapreecha, Claire, Croucher, Nicholas J., Marttinen, Pekka, Davies, Mark R., Steer, Andrew C., Tong, Steven Y. C., Honkela, Antti, P

Journal:

Nature Communications

Year:

2016

Language:

english

File:

PDF, 395 KB

english, 2016

16

On the inconsistency ofℓ1-penalised sparse precision matrix estimation

Otte Heinävaara,Janne Leppä-aho,Jukka Corander,Antti Honkela

Journal:

BMC Bioinformatics

Year:

2016

Language:

english

File:

PDF, 974 KB

english, 2016

17

Efficient differentially private learning improves drug sensitivity prediction

Honkela, Antti, Das, Mrinal, Nieminen, Arttu, Dikmen, Onur, Kaski, Samuel

Journal:

Year:

2018

Language:

english

File:

PDF, 1.11 MB

english, 2018

18

GPrank: an R package for detecting dynamic elements from genome-wide time series

Topa, Hande, Honkela, Antti

Journal:

BMC Bioinformatics

Year:

2018

Language:

english

File:

PDF, 825 KB

english, 2018

19

Representation transfer for differentially private drug sensitivity prediction

Niinimäki, Teppo, Heikkilä, Mikko A, Honkela, Antti, Kaski, Samuel

Journal:

Year:

2019

Language:

english

File:

PDF, 405 KB

english, 2019

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